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Volumetric imaging utilizing a distributed molecular community

Research Briefing Published: 27 March 2025 Nature Biotechnology (2025)Cite this article Subjects We introduce volumetric DNA microscopy, a technique that enables three-dimensional imaging of tissue morphology and gene expression in a single measurement. This feat is achieved by forming a huge intermolecular network of DNA barcodes within an intact specimen and encoding their pairwise proximities

Volumetric imaging utilizing a distributed molecular community

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We introduce volumetric DNA microscopy, a way that allows three-dimensional imaging of tissue morphology and gene expression in a single measurement. This feat is achieved by forming an enormous intermolecular community of DNA barcodes inside an intact specimen and encoding their pairwise proximities right into a DNA sequence library.

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Fig. 1: Volumetric DNA microscopy.

References

  1. Jain, S. et al. Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). Nat. Cell Bio. 25, 1089–1100 (2023). A perspective paper on the progress and significance of making a multiscale spatial atlas of the human physique.

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  2. Ståhl, P. L. et al. Visualization and evaluation of gene expression in tissue sections by spatial transcriptomics. Science 353, 78–82 (2016). This paper introduces the idea of spatial transcriptomics, enabling spatial evaluation of the transcriptome in tissue sections.

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  3. Bressan, D., Battistoni, G. & Hannon, G. J. The daybreak of spatial omics. Science 381, eabq4964 (2023). A evaluate article that systematically compares completely different spatial omics applied sciences.

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  4. Weinstein, J. A., Regev, A. & Zhang, F. DNA microscopy: optics-free spatio-genetic imaging by a stand-alone chemical response. Cell 178, 229–241 (2019). This paper introduces the idea of DNA microscopy, enabling optics-free genomic and morphological imaging of 2D cultured cells.

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This can be a abstract of: Qian, N. & Weinstein, J. A. Spatial transcriptomic imaging of an intact organism utilizing volumetric DNA microscopy. Nat. Biotechnol. https://doi.org/10.1038/s41587-025-02613-z (2025).

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Volumetric imaging utilizing a distributed molecular community.
Nat Biotechnol (2025). https://doi.org/10.1038/s41587-025-02640-w

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